Enter two orthologous genomic sequences and a cDNA (optional)

NOTE: Due to current hardware limitations, the lengths of sequences are limited to 10000 nucleotides. Longer sequences will be truncated to that size. For longer pairs of sequences you can submit an existing alignment file

In the test period, the input form is preloaded with test sequences. If you wish to enter your own sequences, clear the individual ones or


Sequence#1

Sequence name

Paste the sequence

OR enter valid
accession number

OR upload a sequence file


Sequence#2

Sequence name

Paste the sequence

OR enter valid
accession number

OR upload a sequence file



cDNA (optional) find longest ORF     do not show TFBS from ORF

Sequence name

Paste the sequence

OR enter valid
accession number
OR upload a sequence file
   


Alignment method Orca (recommended) 
Note:An option to use the LAGAN aligner is in development